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Installation

Environment​

Create the following conda environment to allow building the software.

conda create -n cfdnalab rust=1.94.0 zstandard perl fontconfig conda-forge::llvmdev conda-forge::clangdev
conda activate cfdnalab

Build from GitHub​

cargo install --git https://github.com/BesenbacherLab/cfDNAlab

Verify installation:

cfdna --help

Build from source​

# Once downloaded, enter the directory
cd cfDNAlab
# Then build it as so:
cargo build --release

The binary is available at target/release/cfdna.

Verify installation:

./target/release/cfdna --help